cromwell

[Diane Trout]

Hi,

I've been asked to start trying to use cromwell
https://software.broadinstitute.org/wdl/

Debian doesn't have packaging for it yet, it looks like its BSD
licensed with an extra "no endorsement clause"

https://github.com/broadinstitute/cromwell/blob/develop/LICENSE.txt

* Neither the name Broad Institute, Inc. nor the names of its
contributors may be used to endorse or promote products derived from
this software without specific prior written permission.

The build requirements include sbt (scala build tool). Debian has an
older version, but it looks like the package was abandoned.
https://tracker.debian.org/pkg/sbt

[Andreas Tille]

Post by Diane Trout
The build requirements include sbt (scala build tool). Debian has an
older version, but it looks like the package was abandoned.
https://tracker.debian.org/pkg/sbt

Sbt is in a very bad state and I was quite in vain since pilon has scala
sources. Please check how the pion source is build and verify if you
can do it similarly without using sbt.

Good luck

Andreas.